SynBioDex-archive libSBOLcore issues

SynBioDex-archive / libSBOLcore

The core Java models of SBOL

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Circular references

#21 Juul closed 13 years ago
0
Not obvious that all DnaComponents must be explicitly added to a collection

#20 Juul closed 13 years ago
0
Using string to specify SequenceAnnotation.strand

#19 Juul closed 13 years ago
1
No way of setting precedes to null.

#18 Juul closed 13 years ago
2
SequenceAnnotation.strand should be Enum

#17 timothyham closed 13 years ago
2
How to tell if two SequenceAnnotation or DnaComponents are 'the same'

#16 drdozer closed 13 years ago
1
consider int instead of Integer

#15 mgaldzic closed 13 years ago
1
java.util.Collection is a very general type, should it be sets?

#14 mgaldzic closed 13 years ago
1
for very large bits of DNA 'String' is insufficient

#13 mgaldzic opened 13 years ago
0
Collection clashes with java.util.Collection

#12 mgaldzic closed 13 years ago
1
retrieving things by (unique?) IDs

#11 mgaldzic opened 13 years ago
1
SequenceAnnotation locations ambiguity

#10 mgaldzic closed 13 years ago
1
SequenceAnnotation.genbankStart is confusing

#9 mgaldzic closed 13 years ago
1
factor - name, description, displayId into SBOL "base" class?

#8 mgaldzic opened 13 years ago
0
SequenceAnnotation.strand should be int

#7 timothyham closed 13 years ago
4
Classes are missing setters and sometimes getters

#6 timothyham closed 13 years ago
2
Collection.components and DnaComponent.annotations should preserve order

#5 timothyham closed 13 years ago
5
should every .add method have a .remove equivalent?

#4 mgaldzic closed 13 years ago
3
remove .hascode and .equals methods

#3 mgaldzic closed 13 years ago
0
change to plural form on attributes

#2 mgaldzic closed 13 years ago
0
write comments for .getPrecedes .addPrecedes

#1 mgaldzic opened 13 years ago
0