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SynBioDex / pySBOL

SWIG-Python wrappers implementing SBOL 2.2
Apache License 2.0
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Handle sourceLocation values to support deletions. #111

Closed jakebeal closed 4 years ago

jakebeal commented 5 years ago

Issue #106 is about being able to split where something goes in a new genome using Location objects on a SequenceAnnotation. This issue is the complement, about getting correct sequences from Location objects in the sourceLocation field of a Component.

For example, we should be able to pull a 2 kb insert construct out of a 5 kb plasmid by having a sourceLocation of e.g., 2001-4000.

Another example: replacing a 2 kb section of a genome might have a sourceLocation of 1-1000 and 3001-10000.

bbartley commented 4 years ago

ComponentDefinition.compile method can now sample subsequences of a subcomponent using SourceLocations, implemented in https://github.com/SynBioDex/libSBOL/pull/216/commits/23405c8b3040dc67c76a31cee0042ab66ac15555