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SynBioHub / synbiohub

Web application enabling users and software to browse, upload, and share synthetic biology designs
https://wiki.synbiohub.org
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Bad sequence encodings in SEVAHub #1480

Open jakebeal opened 2 years ago

jakebeal commented 2 years ago

I ran into validation errors that trace back to some bad sequence encodings in SEVAhub. This doesn't seem like the right place to report them, but there is no other contact information listed.

The specific cases that I ran into are on 

http://sevahub.es/public/Canonical/seq_seqKm 
http://sevahub.es/public/Canonical/seq_seqpRO1600_ColE1

both of which have the obviously incorrect encoding: http://seva.cnb.csic.eshttp//seva.cnb.csic.es/

Other sequences, such as http://sevahub.es/public/Canonical/seq_seqSanDI have the correct encoding value. The sequences with issues, however, were chosen essentially at random in a test involving SEVAhub, so there are likely many others with the same issue there.

jakebeal commented 2 years ago

A little more information: it looks like this affects nearly every top-level SEVA plasmid, because it affects the antibiotic resistance genes and ORIs.