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SyneRBI / PETRIC

PET Image Reconstruction Challenge 2024
https://www.ccpsynerbi.ac.uk/events/petric/
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framework v1 #1

Closed casperdcl closed 2 months ago

casperdcl commented 8 months ago

one example notebook

  1. download data https://github.com/TomographicImaging/SyneRBI-Challenge/blob/nema-data/src/SIRF_data_preparation/try_data_preparation.py
  2. run NEMA reconstruction (BSREM Algorithm) https://github.com/SyneRBI/SIRF-Contribs/blob/master/src/notebooks/BSREM_illustration.ipynb
  3. get ROIs https://github.com/SyneRBI/SIRF-Contribs/blob/master/src/Python/sirf/contrib/NEMA/generate_nema_rois.py
  4. run metrics https://github.com/TomographicImaging/Hackathon-000-Stochastic-QualityMetrics/blob/cil_callback/img_quality_cil_stir/image_quality_callback.py
  5. dummy Algorithm for users to implement custom reconstruction with

submissions & leaderboard

  1. template repo (this one)
  2. README instructions
    • must use SIRF projectors
    • must use CIL Algorithm
    • max binary size 1GB (e.g. pretrained CNN weights)
  3. one private fork per team (maybe hosted by us + we manually give write access to GH usernames)
  4. GH workflow to evaluate metrics & update leaderboard
    • on: push: quick basic tests
    • on: tag: full run one dataset
    • after submission deadline: full run on more datasets (maybe only on top 30%)

ideas/TODO