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SyneRBI / SIRF-Exercises

SIRF Training and demonstration material
http://www.ccpsynerbi.ac.uk
Apache License 2.0
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path problem in synergistic notebooks #148

Closed KrisThielemans closed 2 years ago

KrisThielemans commented 3 years ago

See https://hackmd.io/@SIRF-CIL-Fully3D/SkZqjSf3O#Q-Data-not-downloaded-on-cloud

samdporter commented 2 years ago

These path issues can be fixed in the VM with a little bit of tweaking (though I'm getting a jupyter server error so can't test it atm), but I think anything we do will cause problems in the STFC cloud. Currently the data is downloaded to "/mnt/materials/SIRF/Fully3D/SIRF/" which is Read-only.

DANAJK commented 2 years ago

These path issues can be fixed in the VM with a little bit of tweaking (though I'm getting a jupyter server error so can't test it atm), but I think anything we do will cause problems in the STFC cloud. Currently the data is downloaded to "/mnt/materials/SIRF/Fully3D/SIRF/" which is Read-only.

Yes. This means we can’t get started because the cd_to_working_dir tries to create a directory, but cannot.

DANAJK commented 2 years ago

Yes. This means we can’t get started because the cd_to_working_dir tries to create a directory, but cannot.

Works if you first run the bash script download_data.sh (without the -h) described in notebook Introductory/introduction.ipynb

KrisThielemans commented 2 years ago

@samdporter I believe you fixed this in #173 (or earlier)?

samdporter commented 2 years ago

Yes. This works as long as the introduction nb (or just the bash script) is run