building gadgetron master is failing on the current VM

KrisThielemans commented 5 years ago

I had a few problems trying to upgrade Gadgetron on my current 2.0 VM

CMake couldn't find cblas.h, see http://cmake.3232098.n2.nabble.com/find-path-and-double-symbolic-link-td7599980.html. Current lousy work-around
```
cmake -DCBLAS_INCLUDE_DIR=/usr/include/x86_64-linux-gnu/ .
```
139
As we have doxygen, it requires sphinx, which then complained about missing module breathe. Pending a possibility to disable the documentation, https://github.com/gadgetron/gadgetron/issues/778, we need to install this module. For some reason, this wasn't enough
```
sudo apt install python3-breathe
```
fix
```
sudo apt install python3-pip
python3 -m pip install breathe
```
but this gave me a "service" warning about upgrading libssl1.1 and restarting services, which would break any automatic set-up (but maybe that won't happen when we build a new VM).

Painful.

KrisThielemans commented 5 years ago

sorry. on Ubuntu 18.04, sphinx uses python2, therefore the above lines are incorrect. we currently need for instance

python -m pip install breathe

KrisThielemans commented 4 years ago

@dchansen kindly introduced an Gadgetron option BUILD_DOCUMENTATION defaulting to OFF, so ignore all the sphinx problems as they won't appear anymore.

paskino commented 3 years ago

https://github.com/SyneRBI/SIRF-SuperBuild/pull/438 will possibly close this?

KrisThielemans commented 2 years ago

This is obsolete and needs to be fixed elsewhere anyway. I suggest to close this. Just not sure where to document the -DCBLAS_INCLUDE_DIR solution

SyneRBI / SyneRBI_VM

building gadgetron master is failing on the current VM #141

139