Feat/incorporate robust ec fseof

SysBioChalmers / CellFactory-ecYeastGEM

Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.

Creative Commons Attribution 4.0 International

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Feat/incorporate robust ec fseof #24

Closed IVANDOMENZAIN closed 3 years ago

IVANDOMENZAIN commented 3 years ago

Additions in this PR:

A working implementation of robust_ecFSEOF
Prediction of gene targets for ME (OEs, KDs and KOs) to enhance production of +100 chemicals
Scripts for analysis of results (targets) at the gene, product and product family levels
Scripts for analysis of Flux control coefficients and pathway enrichment analysis of targets
Yield plots for all chemicals in the study (and scripts for their generation)

IVANDOMENZAIN commented 3 years ago

This one is ready to be merged into devel @hongzhonglu

hongzhonglu commented 3 years ago

Hi @IVANDOMENZAIN Now you can merge pull request yourself.