Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.
Functions for analysis of gene targets profile and stoichiometric pairwise distances
Incorporation of gene targets cluster analysis: scripts for identifying clusters of gene targets profiles (from t-SNE) were introduced. This generated the concept of "cluster strains", potential gene targets that are beneficial for groups of chemicals (not necessarily part of the same chemical families).
Added documentation for execution of analysis functions
Main improvements in this PR: