feat: parameters format, phylDist.mat file and yeast-GEM.yml

[edkerk]

Main improvements in this PR:

• rename KEGG, UniProt and Complex Portal related parameters from e.g. obj.params.keggID to obj.params.kegg.ID, to better group them together
• for Complex Portal, use taxonomic ID instead of species name, as the latter is hard to get exactly in the right format
• remove unused parameters from model adapters, remnants of GECKO1&2
• use RAVEN's phylDist.mat for fuzzyKcatMatching, which is more uptodate and avoids duplicate distribution of the same file (requires https://github.com/SysBioChalmers/RAVEN/pull/498, soon to be added to RAVEN 2.8.3 release)
• provide yeast-GEM in yml format in tutorial, to save space, but also make it less somewhat less accessible for user to make use of it outside the tutorial, as they should rather get the latest yeast-GEM version

• I hereby confirm that I have:

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[github-actions[bot]]

This PR has been automatically tested with GH Actions. Here is the output of the tests:

 
[Warning: Cannot find RAVEN Toolbox in the MATLAB path, or the version is too old (before v2.8.3). Make sure you have installed RAVEN in accordance to the following instructions,
including running 'checkInstallation()': https://github.com/SysBioChalmers/RAVEN/wiki/Installation] 
[> In GECKOInstaller.checkRAVENversion (line 77)
In GECKOInstaller.install (line 13)] 

Note: In the case of multiple test runs, this post will be edited.