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SysBioChalmers / GECKO

Toolbox for including enzyme constraints on a genome-scale model.
http://sysbiochalmers.github.io/GECKO/
MIT License
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Name of the subfolder in GECKO/tutorials/ #330

Closed Yu-sysbio closed 1 year ago

Yu-sysbio commented 1 year ago

Considering that the comparison between light and full is now on the yeast model, I am wondering if it is needed to modify the names of the subfolders in the path, maybe like:

full_ecModel --> yeast_ecModel (or yeast, yeast_case, etc) light_ecModel --> human_ecModel (or human, human_case, etc)

Or just keep it as is otherwise we have to modify throughout the manuscript.

edkerk commented 1 year ago

There's good reason why we removed yeast and human from the tutorial names. Making some adjustments in the protocol and clarification that the light vs. full comparison is for yeast-only should help. It's also for that purpose that I've packaged the whole comparison in one function, the user will not see the light ecModel when running it, only the light_ecModel tutorial gives the user a light ecModel to play around with.

edkerk commented 1 year ago

Agreeing on this solution, I'll close this issue.