GECKO 3.1.1

[edkerk]

Main improvements in this PR:

• Features:
  • addNewRxnsToEC to add new enzyme-catalyzed metabolic reactions to an ecModel. (PR #337)
  • readDLKcatOutput reports which metabolites or reactions are not matching. (solves #334)
  • mapRxnsToConv throws error if empty flux vector is used as input. (solves #332)
• Fixes:
  • getComplexData does not write empty complex data. (solves #338)
• Refactor:
  • Rename Prot to Enz to give the new function names flexibilizeEnzConcs, fillEnzConcs and constraintEnzConcs.
  • ecFSEOF as one combined function to run FSEOF simulations on ecModels.
• Documentation:
  • Minor edits in protocol.m files.

I hereby confirm that I have:

• [x] Selected main as a target branch (top left drop-down menu)

Note: merge from develop to main should be via merge commit, not squash merge.

[github-actions[bot]]

This PR has been automatically tested with GH Actions. Here is the output of the tests:

 
Running geckoCoreFunctionTests
Done geckoCoreFunctionTests
__________

Note: In the case of multiple test runs, this post will be edited.

[Yu-sysbio]

Looks good. Both light and full protocols run very well.