SysBioChalmers / Human-GEM

The generic genome-scale metabolic model of Homo sapiens
https://sysbiochalmers.github.io/Human-GEM-guide/
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remove non-metabolic genes from Protein assembly and degradation subsystems #476

Closed haowang-bioinfo closed 1 year ago

haowang-bioinfo commented 1 year ago

Description of the issue:

gene Reasons Subsystems RxnIDs
ENSG00000131400 No enough supporting evidence, may be involved in processing of pneumocyte surfactant precursors Protein degradation MAR05259;MAR05261;MAR05263;MAR05265;MAR05272;MAR05274;MAR05276;MAR05278;MAR05280;MAR05282;MAR05284;MAR05285;MAR05286;MAR05287;MAR05289;MAR05290
ENSG00000196136 no enough supporting evidence Protein assembly MAR05152
ENSG00000197249 annotated as Inhibitor of serine proteases, not related to protein assembly Protein assembly MAR05153

Current feature/value/output:

Expected feature/value/output:

I hereby confirm that I have:

feiranl commented 1 year ago

LGTM!

haowang-bioinfo commented 1 year ago

The deletion of ENSG00000196136 and ENSG00000197294 is suspended. Because they are the only genes involved in reactions MAR05152 and MAR05153, respectively. Re-inspection is needed before further removal.