search

SysBioChalmers / Human-GEM

The generic genome-scale metabolic model of Homo sapiens
https://sysbiochalmers.github.io/Human-GEM-guide/
Creative Commons Attribution 4.0 International
98 stars 41 forks source link

Duplicate Palmitoyl-CoA Beta-Oxidation Reactions #801

Open Devlin-Moyer opened 10 months ago

Devlin-Moyer commented 10 months ago

Current behavior:

There appear to be a few duplicate reactions representing the beta-oxidation of palmitoyl-CoA:

ID Reaction GPR
MAR03121 FAD [m] + palmitoyl-CoA [m] --> (2E)-hexadecenoyl-CoA [m] + FADH2 [m] ACADVL or ACADL or ACADM or ACAD9
MAR03122 (2E)-hexadecenoyl-CoA [m] + H2O [m] --> (S)-3-hydroxyhexadecanoyl-CoA [m] HADHA and EHHADH and ECHS1
MAR03123 (S)-3-hydroxyhexadecanoyl-CoA [m] + NAD+ [m] --> 3-oxopalmitoyl-CoA [m] + H+ [m] + NADH [m] HSD17B10 and HADHA and HADH
MAR03125 3-oxopalmitoyl-CoA [m] + CoA [m] --> acetyl-CoA [m] + myristoyl-CoA [m] HADHA and HADHB and ACAA2
MAR03128 FAD [m] + myristoyl-CoA [m] --> (2E)-tetradecenoyl-CoA [m] + FADH2 [m] ACADVL or ACOX3 or ACADL or ACADM or ACOX1 or ACAD9
MAR03129 (2E)-tetradecenoyl-CoA [m] + H2O [m] --> (S)-3-hydroxytetradecanoyl-CoA [m] HADHA and EHHADH and ECHS1
MAR03130 (S)-3-hydroxytetradecanoyl-CoA [m] + NAD+ [m] --> 3-oxotetradecanoyl-CoA [m] + H+ [m] + NADH [m] HSD17B10 and HADHA and HADH
MAR03132 3-oxotetradecanoyl-CoA [m] + CoA [m] --> acetyl-CoA [m] + lauroyl-CoA [m] HADHA and HADHB and ACAA2
MAR03135 FAD [m] + lauroyl-CoA [m] --> (2E)-dodecenoyl-CoA [m] + FADH2 [m] ACADVL or ACADL or ACADM or ACAD9
MAR03136 (2E)-dodecenoyl-CoA [m] + H2O [m] --> (S)-3-hydroxydodecanoyl-CoA [m] HADHA and EHHADH and ECHS1
MAR03137 (S)-3-hydroxydodecanoyl-CoA [m] + NAD+ [m] --> 3-oxododecanoyl-CoA [m] + H+ [m] + NADH [m] HSD17B10 and HADHA and HADH
MAR03139 3-oxododecanoyl-CoA [m] + CoA [m] --> acetyl-CoA [m] + decanoyl-CoA [m] HADHA and HADHB and ACAA2
MAR03142 FAD [m] + decanoyl-CoA [m] ⇒ (2E)-decenoyl-CoA [m] + FADH2 [m] ACADM or ACAD9
MAR03143 (2E)-decenoyl-CoA [m] + H2O [m] ⇒ (S)-hydroxydecanoyl-CoA [m] HADHA and EHHADH and ECHS1
MAR03144 (S)-hydroxydecanoyl-CoA [m] + NAD+ [m] ⇒ 3-oxodecanoyl-CoA [m] + H+ [m] + NADH [m] HSD17B10 and HADHA and HADH
MAR03146 3-oxodecanoyl-CoA [m] + CoA [m] ⇒ acetyl-CoA [m] + octanoyl-CoA [m] HADHA and HADHB and ACAA2
MAR03150 (2E)-octenoyl-CoA [m] + H2O [m] ⇒ (S)-hydroxyoctanoyl-CoA [m] HADHA and EHHADH and ECHS1
MAR03151 (S)-hydroxyoctanoyl-CoA [m] + NAD+ [m] ⇒ 3-oxooctanoyl-CoA [m] + H+ [m] + NADH [m] HSD17B10 and HADHA and HADH
MAR03153 3-oxooctanoyl-CoA [m] + CoA [m] ⇒ acetyl-CoA [m] + hexanoyl-CoA [m] HADHA and HADHB and ACAA2
MAR03156 FAD [m] + hexanoyl-CoA [m] ⇒ (2E)-hexenoyl-CoA [m] + FADH2 [m] ACADSB
MAR03157 (2E)-hexenoyl-CoA [m] + H2O [m] ⇒ (S)-hydroxyhexanoyl-CoA [m] HADHA and EHHADH and ECHS1
MAR03158 (S)-hydroxyhexanoyl-CoA [m] + NAD+ [m] ⇒ 3-oxohexanoyl-CoA [m] + H+ [m] + NADH [m] HSD17B10 and HADHA and HADH
MAR03160 3-oxohexanoyl-CoA [m] + CoA [m] ⇒ acetyl-CoA [m] + butyryl-CoA [m] HADHA and HADHB and ACAA2
MAR03163 FAD [m] + butyryl-CoA [m] ⇒ FADH2 [m] + crotonyl-CoA [m] ACADM or ACADS or ACADSB or ACAD8 or ACAD9 or ACAD11
MAR03164 H2O [m] + crotonyl-CoA [m] ⇒ (S)-3-hydroxybutyryl-CoA [m] HADHA and EHHADH and ECHS1
MAR03166 (S)-3-hydroxybutyryl-CoA [m] + NAD+ [m] ⇒ H+ [m] + NADH [m] + acetoacetyl-CoA [m] HSD17B10 and HADHA and HADH
MAR03885 CoA [m] + acetoacetyl-CoA [m] ⇔ 2 acetyl-CoA [m] ACAT1
MAR05325 CoA [m] + FAD [m] + H2O [m] + NAD+ [m] + palmitoyl-CoA [m] --> acetyl-CoA [m] + FADH2 [m] + H+ [m] + myristoyl-CoA [m] + NADH [m] ACADVL and HADHA and HADHB
MAR00764 (2E)-hexadecenoyl-CoA [m] + 4 CoA [m] + 3 FAD [m] + 4 H2O [m] + 4 NAD+ [m] --> 4 acetyl-CoA [m] + 3 FADH2 [m] + 4 H+ [m] + 4 NADH [m] + octanoyl-CoA [m] ACADM or ACADS
MAR00757 4 CoA [m] + 4 FAD [m] + 4 H2O [m] + 4 NAD+ [m] + palmitoyl-CoA [m] --> 4 acetyl-CoA [m] + 4 FADH2 [m] + 4 H+ [m] + 4 NADH [m] + octanoyl-CoA [m] ACADM or ACADS
MAR00756 7 CoA [m] + 7 FAD [m] + 7 H2O [m] + 7 NAD+ [m] + palmitoyl-CoA [m] --> 8 acetyl-CoA [m] + 7 FADH2 [m] + 7 H+ [m] + 7 NADH [m] ACADM or ACADS

Proposed changes: