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SysBioChalmers / Human-GEM

The generic genome-scale metabolic model of Homo sapiens
https://sysbiochalmers.github.io/Human-GEM-guide/
Creative Commons Attribution 4.0 International
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Update name of heneicosanoic acid in full metabolic task file #828

Open JonathanRob opened 3 weeks ago

JonathanRob commented 3 weeks ago

Current behavior:

During discussion in #825, it was discovered that metabolite MAM02053 was renamed in the model from henicosanoic acid to heneicosanoic acid in #518 (discussed in #491) since the original name was misspelled; however, the metabolite name was not updated in the metabolic task file metabolicTasks_Full.txt.

Expected feature/value/output:

Rename henicosanoic acid to heneicosanoic acid in metabolicTasks_Full.txt.

JHL-452b commented 3 weeks ago

Looks good! I agree to rename henicosanoic acid to heneicosanoic acid, but I did not find henicosanoic acid in metabolicTasks_Essential.txt. This seems a little strange. Could you please specify the task that requires this metabolite involved?

JonathanRob commented 3 weeks ago

Ah, my bad - I meant metabolicTasks_Full.txt, not the essential task list. I will update this in the issue description.

feiranl commented 3 weeks ago

I agree with this. Nice catch!