SysBioChalmers / Human-GEM

The generic genome-scale metabolic model of Homo sapiens
https://sysbiochalmers.github.io/Human-GEM-guide/
Creative Commons Attribution 4.0 International
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update model files #881

Open edkerk opened 1 month ago

edkerk commented 1 month ago

Current behavior:

As long desired, RAVEN now no longer adds prefixes to metabolite, reaction, gene and compartment identifiers. It is now suitable to do some refactoring at Human-GEM of the model files and input/output functions, including some other cleanup.

Suggested changes:

Boxes above are ticked once the changes are implemented here.

To do when preparing next release

feiranl commented 1 month ago

LGTM! Please go ahead and make changes!

edkerk commented 1 month ago

Ticked boxes are resolved in #883, remaining will be done with new release.