help: many errors when running in MATLAB trial version

[Preshita1997]

I have one few problems while using RAVENTOOLBOX. I have installed MATLAB trial version R2021a and RAVEN Version 2.5.0 and branch master and getmodel homology ( I have tried both). Now I able to run tutorials available in RAVEN toolbox successfully along with few function (codes) but majority of codes available in core file, external file, doc files are showing error while executing. One example is when I executed the function : blastStructure=getBlast(organismID,fastaFile,modelIDs,refFastaFiles), it is showing this error getBlast Not enough input arguments. Error in getBlast (line 34) organismID=cellstr(organismID); I am receiving this kind of errors in many files and not able to perform functions. Please guide me for the same so that I can execute all programs available. Thank you.

[simas232]

RAVEN is not compatible with MATLAB trial versions, try full version

[edkerk]

@simas232 Why is does trial version not work? @Preshita1997 How did you define fastaFile as part of the blastStructure = getBlast(organismID, fastaFile, modelIDs, refFastaFiles) command? Is it a string? I can only replicate this error if I do not specify the fastafile (so run getBlast(organismID) where organismID = 'test'). Can you please also post the output from checkInstallation?

[simas232]

@edkerk, I remember that several students had problems running RAVEN on the MATLAB trial version during the Metabolic Engineering course. That was back in autumn 2018-2019, not sure if this problem is still relevant. If I recall correctly, the Excel import function did not work, but I am not sure about the model reconstruction function, perhaps it worked well.

[Preshita1997]

Please find the attached screenshot of my matlab window. It seems there is some error in a few lines and there are suggestions for adding percolating arrays. Please help me solve this if possible.

On Sat, May 22, 2021 at 2:03 AM Simonas Marcišauskas < @.***> wrote:

@edkerk https://github.com/edkerk, I remember that several students had problems running RAVEN on the MATLAB trial version during the Metabolic Engineering course. That was back in autumn 2018-2019, not sure if this problem is still relevant. If I recall correctly, the Excel import function did not work, but I am not sure about the model reconstruction function, perhaps it worked well.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/SysBioChalmers/RAVEN/issues/345#issuecomment-846239941, or unsubscribe https://github.com/notifications/unsubscribe-auth/AUEYOP4RB5SMA45RCVSYEXTTO27SDANCNFSM45IJ7WXQ .

[edkerk]

@Preshita1997 Screenshot is missing in your reply.

[Preshita1997]

Respected sir, Please find the attached screenshot and help me rectify the same. Apologies for the late reply.

Thank you, Preshita Bhatt

On Sun, May 23, 2021 at 12:19 AM Eduard Kerkhoven @.***> wrote:

@Preshita1997 https://github.com/Preshita1997 Screenshot is missing in your reply.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/SysBioChalmers/RAVEN/issues/345#issuecomment-846448860, or unsubscribe https://github.com/notifications/unsubscribe-auth/AUEYOP2JTSRILU5PSFYE3P3TO74DZANCNFSM45IJ7WXQ .

[edkerk]

@Preshita1997 You should leave the comment + screenshot in GitHub, instead of replying via email. The screenshot is still missing.

[Preshita1997]

Respected sir, Please find the attached screenshot and help me rectify the same. Thank you.

[edkerk]

You have changed the file getBlastFromExcel, line 1 is not function 0 but rather function blastStructure=getBlastFromExcel(models,blastFile,organismId). Probably best to remove the RAVEN-master folder and again unzip the file you downloaded from the RAVEN GitHub repository.