Closed edkerk closed 8 months ago
This PR has been automatically tested with GH Actions. Here is the output of the tests:
> Installing from location /home/m/actions-runner/_work/RAVEN/RAVEN
> Checking RAVEN release DEVELOPMENT
> Checking MATLAB release 2020b
> Checking system architecture glnxa64
> Set RAVEN in MATLAB path Pass
> Save MATLAB path Pass
> Make binaries executable Pass
> Add Java paths for Excel format Pass
> Checking libSBML version 5.19.0
> Checking model import and export
> Import Excel format Pass
> Export Excel format Pass
> Import SBML format Pass
> Export SBML format Pass
> Checking for LP solvers
Writing problem data to `outpb.lp'...
271 lines were written
> glpk Pass
> gurobi Pass
> soplex Fail
> cobra Pass
> Set RAVEN solver gurobi
> Checking BLAST+ Pass
> Checking DIAMOND Pass
> Checking HMMER Pass
> Checking function uniqueness Pass
*** checkInstallation complete ***
Running blastPlusTests
.
Done blastPlusTests
Running cdhitTests
.
Done cdhitTests
Running checkTasksTests
.
Done checkTasksTests
Running diamondTests
.
Done diamondTests
Running fillGapsLargeTests
..
Done fillGapsLargeTests
Running fillGapsSmallTests
...
Done fillGapsSmallTests
Running hmmerTests
.
Done hmmerTests
Running importExportTests
....
Done importExportTests
Running mafftTests
.
Done mafftTests
Running miriamTests
.
Done miriamTests
Running modelAbilitiesTests
........
Done modelAbilitiesTests
Running modelConversionTests
.
Done modelConversionTests
Running modelCurationTests
.......... ........
Done modelCurationTests
Running modelSortingTests
..
Done modelSortingTests
Running solverTests
..Writing problem data to `outpb.lp'...
271 lines were written
Error occurred in solverTests/testSoplex and it did not run to completion.
---------
Error ID:
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''
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Error Details:
--------------
Error using solverTests>testSoplex (line 100)
Solver not working
..
Done solverTests
Running tinitTests
..........
Done tinitTests
Failure Summary:
Name Failed Incomplete Reason(s)
=======================================================
solverTests/testSoplex X X Errored.
Note: In the case of multiple test runs, this post will be edited.
Mac and Linux binaries are not that easily distributed as the Windows variant, although it might be implemented later (in separate PR).
Main improvements in this PR:
I hereby confirm that I have:
develop
as a target branch