chore: rerun model export - Githubissues

SysBioChalmers / Sco-GEM

The consensus GEM for Streptomyces coelicolor -

https://sysbiochalmers.github.io/Sco-GEM/

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chore: rerun model export #116

Closed edkerk closed 3 years ago

edkerk commented 3 years ago

Main improvements in this PR:

chore: rerun export.py because:
- not all reactions were properly sorted in previous model file
- SBO terms were not properly identified
- cobra 0.20 adds zero charge for metabolite without specified charge

I hereby confirm that I have:

[x] Tested my code with all requirements for running the model
[x] Selected devel as a target branch (top left drop-down menu)