by default block the PSEUDO_ACCEPTOR_NADP, PSEUDO_ACCEPTOR_NAD, PSEUDO_DONOR_NADPH and PSEUDO_DONOR_NADH reactions, that are included to be able to activate reactions with unknown redox co-factor (donor or acceptor), but also has the risk to introduce unrealistic loops and unnaturally links NADPH and NADH pools. Reactions will remain in the model to allow enabling the reactions with unknown redox co-factor.
Main improvements in this PR:
PSEUDO_ACCEPTOR_NADP
,PSEUDO_ACCEPTOR_NAD
,PSEUDO_DONOR_NADPH
andPSEUDO_DONOR_NADH
reactions, that are included to be able to activate reactions with unknown redox co-factor (donor or acceptor), but also has the risk to introduce unrealistic loops and unnaturally links NADPH and NADH pools. Reactions will remain in the model to allow enabling the reactions with unknown redox co-factor.I hereby confirm that I have:
devel
as a target branch (top left drop-down menu)