Fix/SBMLbugs - Githubissues

SysBioChalmers / Yarrowia_lipolytica_W29-GEM

Genome-scale model of Yarrowia lipolytica.

http://www.nature.com/articles/npjsba20165

Creative Commons Attribution 4.0 International

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Closed edkerk closed 6 years ago

edkerk commented 6 years ago

As discussed in #5 , RAVEN export introduced a number of bugs in the SBML code.

fbc_label is now specified for each gene
x_BIOMASS is set as default objective function
most chemical formulae are without brackets
move towards a standardized format of versioning, inspired by yeast-GEM, including not tracking binaries in devel branch, etc.

ChristianLieven commented 6 years ago

Sorry for taking my time! I've been quite busy with family after defending last week! I'll be checking this out in the next few days!