Once settled which approach to follow (#5), a Matlab script should be written to generate the strain-specific models.
[ ] script that takes panYeast-GEM (#3), panID table (#4) and user-specified strain(s) of interest and generates model
[ ] potentially add pseudo, exchange, transport and other non-gene associated reactions from yeast-GEM
[ ] potential need for gap-filling, using approach where transport reactions are preferred over adding reactions for which no gene could be found in the strain of interest
Once settled which approach to follow (#5), a Matlab script should be written to generate the strain-specific models.