SysBioChalmers / yeast-GEM

The consensus GEM for Saccharomyces cerevisiae
http://sysbiochalmers.github.io/yeast-GEM/
Creative Commons Attribution 4.0 International
96 stars 46 forks source link

feat: KEGG pathway annotation #317

Open edkerk opened 2 years ago

edkerk commented 2 years ago

Description of the issue:

With single subSystem assignments (#11), that do no necessarily match KEGG pathways (#307), and multiple KEGG pathways that can match one reaction, there should be dedicated KEGG pathway annotations. These can be stored in the rxnMiriams field (use RAVEN's editMiriam function), as KEGG pathways is on identifiers.org.

Note that some annotation is already available here, but the information in that file is incomplete: this information should be freshly taken from KEGG. If this would yield additional kegg.reaction annotations, then these should of course also be added to the model.

I hereby confirm that I have: