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SysBioChalmers / yeast-GEM

The consensus GEM for Saccharomyces cerevisiae
http://sysbiochalmers.github.io/yeast-GEM/
Creative Commons Attribution 4.0 International
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feat: add UniProt identifiers #349

Closed cheng-yu-zhang closed 1 year ago

cheng-yu-zhang commented 1 year ago

Main improvements in this PR:

All files and codes are in yeast-GEM/add_uniprot_id.

  1. get_uniprot_id.py is for getting uniprot ids from the uniprot website.
  2. SGD_with_Uniprot.csv is the output of get_uniprot_id.py with gene names and its uniprot ids.
  3. SGDgeneNames.tsv is originally in yeast-GEM/data/database.
  4. addUniprotID.m was used to add uniprot ids into yeast-GEM.

I hereby confirm that I have: