implement auxotrophy-based curation

SysBioChalmers / yeast-GEM

The consensus GEM for Saccharomyces cerevisiae

http://sysbiochalmers.github.io/yeast-GEM/

Creative Commons Attribution 4.0 International

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implement auxotrophy-based curation #371

Open edkerk opened 2 months ago

edkerk commented 2 months ago

As detailed in this paper, various curations are proposed to improve Yeast-GEMs performance to predict auxotrophy. The curations are very nicely included detailed here, so can easily be implemented in the yeast-GEM repo.

edkerk commented 3 weeks ago

Not all curations are exactly implemented as proposed in the paper, as commented in the curation script.