jupyterlab>=4 fails building jupyterlab-sysml extension

[GorgiAstro]

It looks like jupyterlab version >= 4 does not manage to build the jupyterlab-sysml extension.

I just tested with my old jupyterlab version 3.6.6 , it built the extension successfully. After upgrading to version 4.0.10 however, I get the following error when jupyterlab tries to build the extension (this is from the jupyterlab debug log):

[LabBuildApp] Building in /opt/conda/share/jupyter/lab [LabBuildApp] Node v20.9.0

[LabBuildApp] Yarn configuration loaded. [LabBuildApp] Building jupyterlab assets (production, minimized) [LabBuildApp] > node /opt/conda/lib/python3.11/site-packages/jupyterlab/staging/yarn.js install [LabBuildApp] ➤ YN0000: ┌ Resolution step ➤ YN0002: │ @jupyterlab/application-top@workspace:. doesn't provide codemirror (pa58b9), requested by @systems-modeling/jupyterlab-sysml ➤ YN0002: │ @jupyterlab/cell-toolbar-extension@npm:4.0.9 doesn't provide react (pf2141), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/console-extension@npm:4.0.9 doesn't provide react (pc2341), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/csvviewer-extension@npm:4.0.9 doesn't provide react (pf2b83), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/debugger-extension@npm:4.0.9 doesn't provide react (p42cf6), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/documentsearch-extension@npm:4.0.9 doesn't provide react (p5b112), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/extensionmanager-extension@npm:4.0.9 doesn't provide react (p2812f), requested by @jupyterlab/settingregistry ➤ YN0060: │ @jupyterlab/extensionmanager@npm:4.0.9 provides react (pa03d2) with version 18.2.0, which doesn't satisfy what react-paginate requests ➤ YN0002: │ @jupyterlab/filebrowser-extension@npm:4.0.9 doesn't provide react (p70a5b), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/fileeditor-extension@npm:4.0.9 doesn't provide react (p02cb1), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/htmlviewer-extension@npm:4.0.9 doesn't provide react (pb6ffe), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/json-extension@npm:4.0.9 doesn't provide @types/react (p0b2d9), requested by react-json-tree ➤ YN0002: │ @jupyterlab/mainmenu-extension@npm:4.0.9 doesn't provide react (p73fdb), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/markdownviewer-extension@npm:4.0.9 doesn't provide react (p0800d), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/metadataform-extension@npm:4.0.9 doesn't provide react (p98121), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/metadataform@npm:4.0.9 doesn't provide @rjsf/utils (peac99), requested by @rjsf/core ➤ YN0002: │ @jupyterlab/metadataform@npm:4.0.9 doesn't provide @rjsf/utils (p69871), requested by @rjsf/validator-ajv8 ➤ YN0002: │ @jupyterlab/services@npm:7.0.9 doesn't provide react (p89091), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/settingeditor-extension@npm:4.0.9 doesn't provide react (p30a92), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/statusbar-extension@npm:4.0.9 doesn't provide react (p8e383), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/terminal-extension@npm:4.0.9 doesn't provide react (p7976c), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/toc-extension@npm:6.0.9 doesn't provide react (p0efb9), requested by @jupyterlab/settingregistry ➤ YN0002: │ @jupyterlab/translation-extension@npm:4.0.9 doesn't provide react (pd0328), requested by @jupyterlab/settingregistry ➤ YN0000: │ Some peer dependencies are incorrectly met; run yarn explain peer-requirements for details, where is the six-letter p-prefixed code ➤ YN0000: └ Completed in 0s 493ms ➤ YN0000: ┌ Fetch step ➤ YN0000: └ Completed in 0s 576ms ➤ YN0000: ┌ Link step ➤ YN0000: └ Completed in 0s 710ms ➤ YN0000: Done with warnings in 1s 911ms

[LabBuildApp] > node /opt/conda/lib/python3.11/site-packages/jupyterlab/staging/yarn.js dlx yarn-berry-deduplicate -s fewerHighest --fail [LabBuildApp] ➤ YN0000: ┌ Resolution step ➤ YN0000: └ Completed in 5s 853ms ➤ YN0000: ┌ Fetch step ➤ YN0000: └ Completed ➤ YN0000: ┌ Link step ➤ YN0000: └ Completed in 1s 341ms ➤ YN0000: Done in 7s 369ms

No duplicates found, yarn.lock identical

[LabBuildApp] > node /opt/conda/lib/python3.11/site-packages/jupyterlab/staging/yarn.js run build:prod:minimize [LabBuildApp] [webpack-cli] ModuleNotFoundError: Module not found: Error: Can't resolve 'codemirror' in '/opt/conda/share/jupyter/lab/staging/node_modules/@systems-modeling/jupyterlab-sysml/build' at /opt/conda/share/jupyter/lab/staging/node_modules/webpack/lib/Compilation.js:2016:28 at /opt/conda/share/jupyter/lab/staging/node_modules/webpack/lib/NormalModuleFactory.js:798:13 at eval (eval at create (/opt/conda/share/jupyter/lab/staging/node_modules/tapable/lib/HookCodeFactory.js:33:10), :10:1) at /opt/conda/share/jupyter/lab/staging/node_modules/webpack/lib/NormalModuleFactory.js:270:22 at eval (eval at create (/opt/conda/share/jupyter/lab/staging/node_modules/tapable/lib/HookCodeFactory.js:33:10), :9:1) at /opt/conda/share/jupyter/lab/staging/node_modules/webpack/lib/NormalModuleFactory.js:434:22 at /opt/conda/share/jupyter/lab/staging/node_modules/webpack/lib/NormalModuleFactory.js:116:11 at /opt/conda/share/jupyter/lab/staging/node_modules/webpack/lib/NormalModuleFactory.js:670:25 at /opt/conda/share/jupyter/lab/staging/node_modules/webpack/lib/NormalModuleFactory.js:855:8 at /opt/conda/share/jupyter/lab/staging/node_modules/webpack/lib/NormalModuleFactory.js:975:5 resolve 'codemirror' in '/opt/conda/share/jupyter/lab/staging/node_modules/@systems-modeling/jupyterlab-sysml/build' Parsed request is a module using description file: /opt/conda/share/jupyter/lab/staging/node_modules/@systems-modeling/jupyterlab-sysml/package.json (relative path: ./build) Field 'browser' doesn't contain a valid alias configuration resolve as module /opt/conda/share/jupyter/lab/staging/node_modules/@systems-modeling/jupyterlab-sysml/build/node_modules doesn't exist or is not a directory /opt/conda/share/jupyter/lab/staging/node_modules/@systems-modeling/jupyterlab-sysml/node_modules doesn't exist or is not a directory /opt/conda/share/jupyter/lab/staging/node_modules/@systems-modeling/node_modules doesn't exist or is not a directory /opt/conda/share/jupyter/lab/staging/node_modules/node_modules doesn't exist or is not a directory looking for modules in /opt/conda/share/jupyter/lab/staging/node_modules single file module using description file: /opt/conda/share/jupyter/lab/staging/package.json (relative path: ./node_modules/codemirror) no extension Field 'browser' doesn't contain a valid alias configuration /opt/conda/share/jupyter/lab/staging/node_modules/codemirror doesn't exist .js Field 'browser' doesn't contain a valid alias configuration /opt/conda/share/jupyter/lab/staging/node_modules/codemirror.js doesn't exist .json Field 'browser' doesn't contain a valid alias configuration /opt/conda/share/jupyter/lab/staging/node_modules/codemirror.json doesn't exist .wasm Field 'browser' doesn't contain a valid alias configuration /opt/conda/share/jupyter/lab/staging/node_modules/codemirror.wasm doesn't exist /opt/conda/share/jupyter/lab/staging/node_modules/codemirror doesn't exist /opt/conda/share/jupyter/lab/node_modules doesn't exist or is not a directory /opt/conda/share/jupyter/node_modules doesn't exist or is not a directory /opt/conda/share/node_modules doesn't exist or is not a directory /opt/conda/node_modules doesn't exist or is not a directory /opt/node_modules doesn't exist or is not a directory /node_modules doesn't exist or is not a directory

[LabBuildApp] JupyterLab failed to build [LabBuildApp] ERROR | Build failed. Troubleshooting: If the build failed due to an out-of-memory error, you may be able to fix it by disabling the dev_build and/or minimize options.

If you are building via the jupyter lab build command, you can disable these options like so:

jupyter lab build --dev-build=False --minimize=False

You can also disable these options for all JupyterLab builds by adding these lines to a Jupyter config file named jupyter_config.py:

c.LabBuildApp.minimize = False c.LabBuildApp.dev_build = False

If you don't already have a jupyter_config.py file, you can create one by adding a blank file of that name to any of the Jupyter config directories. The config directories can be listed by running:

jupyter --paths

Explanation:

• dev-build: This option controls whether a dev or a more streamlined production build is used. This option will default to False (i.e., the production build) for most users. However, if you have any labextensions installed from local files, this option will instead default to True. Explicitly setting dev-build to False will ensure that the production build is used in all circumstances.

• minimize: This option controls whether your JS bundle is minified during the Webpack build, which helps to improve JupyterLab's overall performance. However, the minifier plugin used by Webpack is very memory intensive, so turning it off may help the build finish successfully in low-memory environments.

[LabBuildApp] Traceback (most recent call last):

[LabBuildApp] File "/opt/conda/lib/python3.11/site-packages/jupyterlab/debuglog.py", line 47, in debug_logging yield

[LabBuildApp] File "/opt/conda/lib/python3.11/site-packages/jupyterlab/labapp.py", line 206, in start raise e

[LabBuildApp] File "/opt/conda/lib/python3.11/site-packages/jupyterlab/labapp.py", line 197, in start build(

[LabBuildApp] File "/opt/conda/lib/python3.11/site-packages/jupyterlab/commands.py", line 507, in build return handler.build( ^^^^^^^^^^^^^^

[LabBuildApp] File "/opt/conda/lib/python3.11/site-packages/jupyterlab/commands.py", line 723, in build raise RuntimeError(msg)

[LabBuildApp] RuntimeError: JupyterLab failed to build

Environment:

• Ubuntu 22.04 amd64
• I tried both in a docker image and directly in Ubuntu
• jupyterlab-sysml version 0.37.
• conda environment:

# packages in environment at /opt/conda: # # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge aiosqlite 0.19.0 pyhd8ed1ab_0 conda-forge alembic 1.13.1 pyhd8ed1ab_0 conda-forge alsa-lib 1.2.10 hd590300_0 conda-forge anyio 4.2.0 pyhd8ed1ab_0 conda-forge archspec 0.2.2 pyhd8ed1ab_0 conda-forge argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py311h459d7ec_4 conda-forge arrow 1.3.0 pyhd8ed1ab_0 conda-forge asttokens 2.4.1 pyhd8ed1ab_0 conda-forge async-lru 2.0.4 pyhd8ed1ab_0 conda-forge async_generator 1.10 py_0 conda-forge atk-1.0 2.38.0 hd4edc92_1 conda-forge attrs 23.1.0 pyh71513ae_1 conda-forge babel 2.14.0 pyhd8ed1ab_0 conda-forge beautifulsoup4 4.12.2 pyha770c72_0 conda-forge bleach 6.1.0 pyhd8ed1ab_0 conda-forge blinker 1.7.0 pyhd8ed1ab_0 conda-forge boltons 23.1.1 pyhd8ed1ab_0 conda-forge brotli-python 1.1.0 py311hb755f60_1 conda-forge bzip2 1.0.8 hd590300_5 conda-forge c-ares 1.24.0 hd590300_0 conda-forge ca-certificates 2023.11.17 hbcca054_0 conda-forge cached-property 1.5.2 hd8ed1ab_1 conda-forge cached_property 1.5.2 pyha770c72_1 conda-forge cairo 1.18.0 h3faef2a_0 conda-forge certifi 2023.11.17 pyhd8ed1ab_0 conda-forge certipy 0.1.3 py_0 conda-forge cffi 1.16.0 py311hb3a22ac_0 conda-forge charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge comm 0.1.4 pyhd8ed1ab_0 conda-forge conda 23.11.0 py311h38be061_1 conda-forge conda-libmamba-solver 23.12.0 pyhd8ed1ab_0 conda-forge conda-package-handling 2.2.0 pyh38be061_0 conda-forge conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge configurable-http-proxy 4.6.1 h92b4e83_0 conda-forge cryptography 41.0.7 py311hcb13ee4_1 conda-forge debugpy 1.8.0 py311hb755f60_1 conda-forge decorator 5.1.1 pyhd8ed1ab_0 conda-forge defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge distro 1.8.0 pyhd8ed1ab_0 conda-forge entrypoints 0.4 pyhd8ed1ab_0 conda-forge exceptiongroup 1.2.0 pyhd8ed1ab_0 conda-forge executing 2.0.1 pyhd8ed1ab_0 conda-forge expat 2.5.0 hcb278e6_1 conda-forge fmt 10.1.1 h00ab1b0_1 conda-forge font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge font-ttf-inconsolata 3.000 h77eed37_0 conda-forge font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge font-ttf-ubuntu 0.83 h77eed37_1 conda-forge fontconfig 2.14.2 h14ed4e7_0 conda-forge fonts-conda-ecosystem 1 0 conda-forge fonts-conda-forge 1 0 conda-forge fqdn 1.5.1 pyhd8ed1ab_0 conda-forge freetype 2.12.1 h267a509_2 conda-forge fribidi 1.0.10 h36c2ea0_0 conda-forge gdk-pixbuf 2.42.10 h829c605_4 conda-forge gettext 0.21.1 h27087fc_0 conda-forge giflib 5.2.1 h0b41bf4_3 conda-forge gitdb 4.0.11 pyhd8ed1ab_0 conda-forge gitpython 3.1.40 pyhd8ed1ab_0 conda-forge gmp 6.3.0 h59595ed_0 conda-forge graphite2 1.3.13 h58526e2_1001 conda-forge graphviz 9.0.0 h78e8752_1 conda-forge greenlet 3.0.3 py311hb755f60_0 conda-forge gtk2 2.24.33 h7f000aa_3 conda-forge gts 0.7.6 h977cf35_4 conda-forge harfbuzz 8.3.0 h3d44ed6_0 conda-forge icu 73.2 h59595ed_0 conda-forge idna 3.6 pyhd8ed1ab_0 conda-forge importlib-metadata 7.0.1 pyha770c72_0 conda-forge importlib_metadata 7.0.1 hd8ed1ab_0 conda-forge importlib_resources 6.1.1 pyhd8ed1ab_0 conda-forge ipykernel 6.26.0 pyhf8b6a83_0 conda-forge ipython 8.19.0 pyh707e725_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge ipywidgets 8.1.1 pypi_0 pypi isoduration 20.11.0 pyhd8ed1ab_0 conda-forge jedi 0.19.1 pyhd8ed1ab_0 conda-forge jinja2 3.1.2 pyhd8ed1ab_1 conda-forge json5 0.9.14 pyhd8ed1ab_0 conda-forge jsonpatch 1.33 pyhd8ed1ab_0 conda-forge jsonpointer 2.4 py311h38be061_3 conda-forge jsonschema 4.20.0 pyhd8ed1ab_0 conda-forge jsonschema-specifications 2023.11.2 pyhd8ed1ab_0 conda-forge jsonschema-with-format-nongpl 4.20.0 pyhd8ed1ab_0 conda-forge jupyter-collaboration 2.0.1 pyhd8ed1ab_0 conda-forge jupyter-lsp 2.2.1 pyhd8ed1ab_0 conda-forge jupyter-server-mathjax 0.2.6 pyh5bfe37b_1 conda-forge jupyter-sysml-kernel 0.37.0 pyhd8ed1ab_0 conda-forge jupyter_client 8.6.0 pyhd8ed1ab_0 conda-forge jupyter_core 5.5.1 py311h38be061_0 conda-forge jupyter_events 0.9.0 pyhd8ed1ab_0 conda-forge jupyter_server 2.12.1 pyhd8ed1ab_0 conda-forge jupyter_server_fileid 0.9.1 pyhd8ed1ab_0 conda-forge jupyter_server_terminals 0.5.0 pyhd8ed1ab_0 conda-forge jupyter_telemetry 0.1.0 pyhd8ed1ab_1 conda-forge jupyter_ydoc 2.0.1 pyhd8ed1ab_0 conda-forge jupyterhub 4.0.2 pyh31011fe_0 conda-forge jupyterhub-base 4.0.2 pyh31011fe_0 conda-forge jupyterlab 4.0.9 pyhd8ed1ab_0 conda-forge jupyterlab-git 0.50.0 pyhd8ed1ab_0 conda-forge jupyterlab-widgets 3.0.9 pypi_0 pypi jupyterlab_pygments 0.3.0 pyhd8ed1ab_0 conda-forge jupyterlab_server 2.25.2 pyhd8ed1ab_0 conda-forge keyutils 1.6.1 h166bdaf_0 conda-forge krb5 1.21.2 h659d440_0 conda-forge lcms2 2.16 hb7c19ff_0 conda-forge ld_impl_linux-64 2.40 h41732ed_0 conda-forge lerc 4.0.0 h27087fc_0 conda-forge libarchive 3.7.2 h2aa1ff5_1 conda-forge libcups 2.3.3 h4637d8d_4 conda-forge libcurl 8.5.0 hca28451_0 conda-forge libdeflate 1.19 hd590300_0 conda-forge libedit 3.1.20191231 he28a2e2_2 conda-forge libev 4.33 hd590300_2 conda-forge libexpat 2.5.0 hcb278e6_1 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libgcc-ng 13.2.0 h807b86a_3 conda-forge libgd 2.3.3 h119a65a_9 conda-forge libglib 2.78.3 h783c2da_0 conda-forge libgomp 13.2.0 h807b86a_3 conda-forge libiconv 1.17 hd590300_2 conda-forge libjpeg-turbo 3.0.0 hd590300_1 conda-forge libmamba 1.5.6 had39da4_0 conda-forge libmambapy 1.5.6 py311hf2555c7_0 conda-forge libnghttp2 1.58.0 h47da74e_1 conda-forge libnsl 2.0.1 hd590300_0 conda-forge libpng 1.6.39 h753d276_0 conda-forge librsvg 2.56.3 he3f83f7_1 conda-forge libsodium 1.0.18 h36c2ea0_1 conda-forge libsolv 0.7.27 hfc55251_0 conda-forge libsqlite 3.44.2 h2797004_0 conda-forge libssh2 1.11.0 h0841786_0 conda-forge libstdcxx-ng 13.2.0 h7e041cc_3 conda-forge libtiff 4.6.0 ha9c0a0a_2 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libuv 1.46.0 hd590300_0 conda-forge libwebp 1.3.2 h658648e_1 conda-forge libwebp-base 1.3.2 hd590300_0 conda-forge libxcb 1.15 h0b41bf4_0 conda-forge libxcrypt 4.4.36 hd590300_1 conda-forge libxml2 2.12.3 h232c23b_0 conda-forge libzlib 1.2.13 hd590300_5 conda-forge lz4-c 1.9.4 hcb278e6_0 conda-forge lzo 2.10 h516909a_1000 conda-forge mako 1.3.0 pyhd8ed1ab_0 conda-forge mamba 1.5.6 py311h3072747_0 conda-forge markupsafe 2.1.3 py311h459d7ec_1 conda-forge matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge menuinst 2.0.1 py311h38be061_0 conda-forge mistune 3.0.2 pyhd8ed1ab_0 conda-forge nb_conda_kernels 2.3.1 py311h38be061_2 conda-forge nbclassic 1.0.0 pyhb4ecaf3_1 conda-forge nbclient 0.8.0 pyhd8ed1ab_0 conda-forge nbconvert 7.13.1 pyhd8ed1ab_0 conda-forge nbconvert-core 7.13.1 pyhd8ed1ab_0 conda-forge nbconvert-pandoc 7.13.1 pyhd8ed1ab_0 conda-forge nbdime 4.0.1 pyhd8ed1ab_0 conda-forge nbformat 5.9.2 pyhd8ed1ab_0 conda-forge nbgitpuller 1.2.0 pypi_0 pypi nbgrader 0.9.1 pypi_0 pypi ncurses 6.4 h59595ed_2 conda-forge nest-asyncio 1.5.8 pyhd8ed1ab_0 conda-forge nodejs 20.9.0 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[himi]

I do not think JupyterLab 3.x plugins are compatible with 4.x. That means we need to migrate or recreate it to support 4.x, and it's not a trivial task or easy fix. I think I can contribute it but I'm afraid it's not a priority in this phase.

[seidewitz]

Currently, we are actually only supporting JupyterLab 2.x. It looks like we should be able to move to JupyterLab 3.x without too much trouble. However, as noted by @himi, moving to JupyterLab 3.x is likely more effort than we have resources for right now.

@GorgiAstro, If you would like to discuss this further with the community, please start a conversation in the SysML v2 Release Google Group.

[jcfrench]

No, this is still problematic. I'm trying to install the SysML V2 jupyterlab prototype on my laptop, and hitting serious compatibility issues during install.

First, the install.bat file attempts to downgrade Jupyter lab at this line:

call conda install "jupyter-sysml-kernel=%SYSML_VERSION%" python=3. jupyterlab=2. graphviz=2. nodejs=14. -c conda-forge -y || goto:error

This downgrades jupyterlab & server to 2.3.2 & 1.2.0

Downscript, this warning gets raised: Conflicting Dependencies: JupyterLab Extension Package

=4.1.5 <4.2.0 >=2.0.0 <3.0.0 @jupyterlab/application

Not sure how to proceed.

Thanks, -Jeff