Resolved Issue #10: Debugged removal of infeasible irreversible reactions

SystemsBioinformatics / ecmtool

Uncover organisms' metabolic blueprints

MIT License

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Closed dhdegroot closed 3 years ago

dhdegroot commented 3 years ago

The issue arose when the nullspace was calculated for a matrix of very large numbers. Therefore, I now changed:

standard column-wise normalisation using fractions before converting the matrix to floats
sped up normalisation by trying to use numpy rather than looping over columns