Hi , I am running
nextflow run systemsgenetics/entapnf --input xxx.fasta --data_ipr /home/xxx/xxx/interproscan/interproscan-5.59-91.0/data/antifam/7.0/.
It had following errors:Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'
Caused by:
Process SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta) terminated with an error exit status (1)
Command executed:
/usr/local/interproscan/interproscan.sh \
--input 2085-NIS.9.fasta \
--cpu 6 \
executor > local (2)
[b6/2e9530] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.22.fasta) [ 0%] 2 of 10030, failed: 2
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_combine -
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_config [ 0%] 0 of 1
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_run -
Execution cancelled -- Finishing pending tasks before exit
-[systemsgenetics/entapnf] Pipeline completed with errors-
Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'
It have more details error below .
I have install interproscan-5.59-91.0 and nextflow ~ version 22.10.3. I also run success for nextflow run systemsgenetics/entapnf -profile test.
Would you advise how to fix this ?
Thanks
Command used and terminal output
$ nextflow run systemsgenetics/entapnf --input xxx.fasta --data_ipr /home/xxx/xxx/interproscan/interproscan-5.59-91.0/data/antifam/7.0/
Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'
Caused by:
Process `SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)` terminated with an error exit status (1)
Command executed:
/usr/local/interproscan/interproscan.sh \
--input 2085-NIS.9.fasta \
--cpu 6 \
executor > local (2)
[b6/2e9530] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.22.fasta) [ 0%] 2 of 10030, failed: 2
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_combine -
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_config [ 0%] 0 of 1
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_run -
Execution cancelled -- Finishing pending tasks before exit
-[systemsgenetics/entapnf] Pipeline completed with errors-
Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'
Caused by:
Process `SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)` terminated with an error exit status (1)
Command executed:
/usr/local/interproscan/interproscan.sh \
--input 2085-NIS.9.fasta \
--cpu 6 \
executor > local (2)
[b6/2e9530] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.22.fasta) [ 0%] 2 of 10030, failed: 2
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_combine -
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_config [ 0%] 0 of 1
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_run -
Execution cancelled -- Finishing pending tasks before exit
-[systemsgenetics/entapnf] Pipeline completed with errors-
Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'
Caused by:
Process `SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)` terminated with an error exit status (1)
Description of the bug
Hi , I am running nextflow run systemsgenetics/entapnf --input xxx.fasta --data_ipr /home/xxx/xxx/interproscan/interproscan-5.59-91.0/data/antifam/7.0/.
It had following errors:Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'
Caused by: Process
SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)
terminated with an error exit status (1)Command executed:
/usr/local/interproscan/interproscan.sh \ --input 2085-NIS.9.fasta \ --cpu 6 \ executor > local (2) [b6/2e9530] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.22.fasta) [ 0%] 2 of 10030, failed: 2 [- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_combine - [- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_config [ 0%] 0 of 1 [- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_run - Execution cancelled -- Finishing pending tasks before exit -[systemsgenetics/entapnf] Pipeline completed with errors- Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'
Thanks
Command used and terminal output
Relevant files
System information
Nextflow 22.10.3 Ubuntu 22.04 Local Docker