A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
Suppose GEMmaker is preempted on a cluster with 100 samples running at once. Upon resume those samples will be picked up where left off but new work directories will be created and the partially completed directories won't get cleaned up through the normal GEMmaker process. we should have a script that allows the user to clean these up to help reduce space.
Suppose GEMmaker is preempted on a cluster with 100 samples running at once. Upon resume those samples will be picked up where left off but new work directories will be created and the partially completed directories won't get cleaned up through the normal GEMmaker process. we should have a script that allows the user to clean these up to help reduce space.