GEMmaker is "failing" according to front page of github

SystemsGenetics / GEMmaker

A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

https://gemmaker.readthedocs.io/en/latest/

MIT License

33 stars 16 forks source link

GEMmaker is "failing" according to front page of github #248

Closed JohnHadish closed 2 years ago

JohnHadish commented 2 years ago

The first screen people see when visiting the site says that "GEMmaker is failing":

Screenshot from 2021-11-18 11-40-15

This appears to be due to linting errors with respect to nfCore compliance

JohnHadish commented 2 years ago

It appears that we are out of date with nf-core aspects. Our "linting file" .nf-core-lint.yml no longer registers with nf-core. I am not sure if there is a way in which we can use an older version of nf-core to evaluate gemmaker for linting, but this would probably be the easiest fix.

spficklin commented 2 years ago

Yeah, nf-core changed their testing process and we just haven't updated GEMmaker yet. someone needs to take the time to do it :-)

spficklin commented 2 years ago

Fixed