A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
Hisat2 has a feature where unmapped reads are assigned to a file of the users choice using the parameter --un. In GEMmaker, this file is ${sample_id}_un.fastq.
Currently, these files are kept, with no cleanup for them present. These files are fairly small, but an edge case scenario could result in them expanding.
This is a low priority request to add functionality that would add a parameter to clean up these files.
Hisat2 has a feature where unmapped reads are assigned to a file of the users choice using the parameter
--un. In GEMmaker, this file is${sample_id}_un.fastq.Currently, these files are kept, with no cleanup for them present. These files are fairly small, but an edge case scenario could result in them expanding.
This is a low priority request to add functionality that would add a parameter to clean up these files.