Open JohnHadish opened 2 years ago
GEMmaker will occasionally encounter memory errors when it encounters large files:
#TRACE sample_id=SRX9369046 #TRACE fastq_lines=0 Ran out of memory for SRX9369046_1.fastq java.lang.OutOfMemoryError: Java heap space
Unfortuently, GEMmaker does not report what default parameters for each process is, and how much memory was used that triggered the error.
It would be nice to have a feature that says something like:
Ran out of memory for SRX9369046_1.fastq - Exceeded limit of 8GB
So that parameters can easily be adjjsted, rather than relying on a trial and error or a code deep dive.
Description of feature
GEMmaker will occasionally encounter memory errors when it encounters large files:
Unfortuently, GEMmaker does not report what default parameters for each process is, and how much memory was used that triggered the error.
It would be nice to have a feature that says something like:
So that parameters can easily be adjjsted, rather than relying on a trial and error or a code deep dive.