SystemsGenetics / GEMmaker

A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
https://gemmaker.readthedocs.io/en/latest/
MIT License
33 stars 16 forks source link

Deleted Code which is never referenced #272

Closed JohnHadish closed 1 year ago

JohnHadish commented 1 year ago

None of the modules in GEMmaker are assigned any of the labels listed in this file. It appears that these defaults were copied and pasted into this file without modifyinig any of the modules.

References:

Process Selectors: https://www.nextflow.io/docs/latest/config.html#config-process-selectors

Labels: https://www.nextflow.io/docs/latest/process.html#process-label

github-actions[bot] commented 1 year ago

This PR is against the master branch :x:


Hi @JohnHadish,

It looks like this pull-request is has been made against the SystemsGenetics/GEMmaker master branch. The master branch on nf-core repositories should always contain code from the latest release. Because of this, PRs to master are only allowed if they come from the SystemsGenetics/GEMmaker dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page. Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

github-actions[bot] commented 1 year ago

YAML linting is failing

To keep the code consistent with lots of contributors, we run automated code consistency checks. To fix this CI test, please run:

Once you push these changes the test should pass, and you can hide this comment :+1:

We highly recommend setting up yaml-lint in your code editor so that this formatting is done automatically on save. Ask about it on Slack for help!

Thanks again for your contribution!

spficklin commented 1 year ago

We can't remove these as they are NF-core requirements.