search

SystemsGenetics / KINC

Knowledge Independent Network Construction
MIT License
11 stars 4 forks source link

Sample string in export #102

Closed spficklin closed 4 years ago

spficklin commented 4 years ago

The sample string, when exporting with KINC is a series of numbers. This causes problems when importing the network into Cytoscape as Cytoscape interprets it as a huge integer and rewrites it. I suggest we add a CSS: prefix (for "cluster sample string") to it so that it does not get interpreted as a numeric value by any downstream analysis

bentsherman commented 4 years ago

@spficklin The extract analytic has a --format minimal option which will exclude the sample string from the output, that could be an easy way to extract a network file that is suitable for Cytoscape.

spficklin commented 4 years ago

Oh, but I want the sample string to show up in Cytoscape too.

spficklin commented 4 years ago

I'm closing this out. I don't think it's needed so much. With the new 3D viewer for KINC this isn't necessary.