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SystemsGenetics / KINC

Knowledge Independent Network Construction
MIT License
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Filtering conditions for the output file. #106

Closed spficklin closed 4 years ago

spficklin commented 4 years ago

Can we make the following adjustments to the extract code when including the condition-specific matrix:

  1. If the user provides a filter where the field name or category does not match the metadata then an error should be thrown letting them know.
  2. If no filter is provided, but a CSM is provided then no filters should applied other than the --mincorr filter. But, the p-values for the fields should appear in the output data.
  3. Change the name of the CSM argument from --CSM to lowercase: --csm
spficklin commented 4 years ago

Thanks @MitchsGreer