search

SystemsGenetics / KINC

Knowledge Independent Network Construction
MIT License
11 stars 4 forks source link

KINC Version 3.4.0 -- not released, but mentioned in documentation as latest #123

Closed SystemsGenetics-0310 closed 4 years ago

SystemsGenetics-0310 commented 4 years ago

HI,

I would love to explore the condition specific functionality of kinc, as noted in version 3.4.0 in the newly updated documentation. however, v3.3.0 seems to be the latest release here. Any help on getting the updated version would be fantastic!

thanks for the great software!

spficklin commented 4 years ago

Hey @cugiuser sorry about the discrepancy. We had planned to release 3.4.0 in December but got caught up in holidays and conferences. We're doing some last minute checking and the updated release should be out hopefully in the next week.

SystemsGenetics-0310 commented 4 years ago

Awesome Stephen. Is it available now?

spficklin commented 4 years ago

@cugiuser Sorry for the delay on this. It's been a bit of a slow haul getting everything finished up. We should be putting out the 3.4 version in the next few weeks or so as well as updated documentation. Thanks for your patience.

spficklin commented 4 years ago

Hi @cugiuser. We have not made the 3.4 release but we believe we've got all of the code changes needed for 3.4. The online documentation now matches what is in the master branch of the code. So if you clone the code, compile (according to the instructions) you will effectively have version 3.4. We should have that release in the next week or two. But if you want to forge ahead. Please feel free.

spficklin commented 4 years ago

Oh, also... there's an example dataset now that comes with KINC that runs fairly quickly and the tutorial has been updated to use that example. There are new filtering scripts and a 3D visualization script as well :-) Although you have to install a few R and Python dependencies

SystemsGenetics-0310 commented 4 years ago

Wonderful Dr. Ficklin. Thank you so much for the note. Will get busy with this today.

Take care, Chris

spficklin commented 4 years ago

Okay v3.4 is now out! Happy KINCing...

SystemsGenetics-0310 commented 4 years ago

Awesome Stephen – I did clone the master branch from 3.3.0 – should I reinstall now with official 3.4.0?

All the best, Chris

spficklin commented 4 years ago

If you cloned in the last 2 days you are fine. We didn't make any changes. If longer ago than that you should pull the official 3.4.0 version.

spficklin commented 4 years ago

@cugiuser we found a bug in the cond-test function for GEMs with samples greater than 31. You'll want to upgrade to version 3.4.1 which was just released.

SystemsGenetics-0310 commented 4 years ago

Thanks Stephen!

Take care, chris

spficklin commented 4 years ago

@cugiuser release v3.4.2 is now out. It has a nice 3D visualization tool :-)

SystemsGenetics-0310 commented 4 years ago

Awesome Stephen. I hope you and your family are all well. We are, just going stir crazy with all that’s going on.

Take care, Chris

From: Stephen Ficklin notifications@github.com Reply-To: SystemsGenetics/KINC reply@reply.github.com Date: Tuesday, July 21, 2020 at 3:26 PM To: SystemsGenetics/KINC KINC@noreply.github.com Cc: Chris Saski saski@clemson.edu, Mention mention@noreply.github.com Subject: Re: [SystemsGenetics/KINC] KINC Version 3.4.0 -- not released, but mentioned in documentation as latest (#123)

@cugiuserhttps://github.com/cugiuser release v3.4.2 is now out. It has a nice 3D visualization tool :-)

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/SystemsGenetics/KINC/issues/123#issuecomment-662060655, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AB6Q6SPQLKKQPSVK7RV7OL3R4XTW3ANCNFSM4KGYIEZQ.