spficklin
commented
1 year ago Hi @herber4 . Thanks for posting an issue.
It seems to me as though the modules used by your script can't be found on Palmetto. Perhaps the directory where the lmod modules are housed isn't in your path?
Otherwise, I don't have access to help debug issues on Palmetto. Perhaps @feltus can help or the Clemson Palmetto admins?
Broken install on palmetto
./pbs-toolkit/modules/install-ace.sh v3.2.0 Lmod has detected the following error: The following module(s) are unknown: "openmpi/3.1.5-gcc/8.3.1-cuda11_0-ucx"
Please check the spelling or version number. Also try "module spider ..." It is also possible your cache file is out-of-date; it may help to try: $ module --ignore_cache load "openmpi/3.1.5-gcc/8.3.1-cuda11_0-ucx"
Also make sure that all modulefiles written in TCL start with the string
%Module
Lmod has detected the following error: The following module(s) are unknown: "qt/5.14.2-gcc/8.3.1"
Please check the spelling or version number. Also try "module spider ..." It is also possible your cache file is out-of-date; it may help to try: $ module --ignore_cache load "qt/5.14.2-gcc/8.3.1"
Also make sure that all modulefiles written in TCL start with the string
%Module
Info: creating stash file /home/herber4/ace/build/.qmake.stash /software/spackages/linux-rocky8-x86_64/gcc-9.5.0/anaconda3-2022.05-zyrazrj6uvrtukupqzhaslr63w7hj6in/bin/mpic++: line 299: x86_64-conda_cos6-linux-gnu-c++: command not found make[1]: [Makefile:5042: global.o] Error 127 make: [Makefile:49: sub-core-make_first] Error 2 /software/spackages/linux-rocky8-x86_64/gcc-9.5.0/anaconda3-2022.05-zyrazrj6uvrtukupqzhaslr63w7hj6in/bin/mpic++: line 299: x86_64-conda_cos6-linux-gnu-c++: command not found make[1]: [Makefile:5042: global.o] Error 127 make: [Makefile:61: sub-core-install_subtargets] Error 2 (base) [herber4@node1155 bin]$ ./pbs-toolkit/modules/install-ace.sh v3.2.0 > pbs_output.txt Lmod has detected the following error: The following module(s) are unknown: "openmpi/3.1.5-gcc/8.3.1-cuda11_0-ucx"
Please check the spelling or version number. Also try "module spider ..." It is also possible your cache file is out-of-date; it may help to try: $ module --ignore_cache load "openmpi/3.1.5-gcc/8.3.1-cuda11_0-ucx"
Also make sure that all modulefiles written in TCL start with the string
%Module
Lmod has detected the following error: The following module(s) are unknown: "qt/5.14.2-gcc/8.3.1"
Please check the spelling or version number. Also try "module spider ..." It is also possible your cache file is out-of-date; it may help to try: $ module --ignore_cache load "qt/5.14.2-gcc/8.3.1"
Also make sure that all modulefiles written in TCL start with the string
%Module
/software/spackages/linux-rocky8-x86_64/gcc-9.5.0/anaconda3-2022.05-zyrazrj6uvrtukupqzhaslr63w7hj6in/bin/mpic++: line 299: x86_64-conda_cos6-linux-gnu-c++: command not found make[1]: [Makefile:5042: global.o] Error 127 make: [Makefile:49: sub-core-make_first] Error 2 /software/spackages/linux-rocky8-x86_64/gcc-9.5.0/anaconda3-2022.05-zyrazrj6uvrtukupqzhaslr63w7hj6in/bin/mpic++: line 299: x86_64-conda_cos6-linux-gnu-c++: command not found make[1]: [Makefile:5042: global.o] Error 127 make: [Makefile:61: sub-core-install_subtargets] Error 2