GSL error with RMT on yeast data

SystemsGenetics / KINC

Knowledge Independent Network Construction

MIT License

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GSL error with RMT on yeast data #49

Closed spficklin closed 6 years ago

spficklin commented 6 years ago

When running RMT on the yeast data I'm getting the following error:

threshold: 0.99
prune matrix: 5246
eigenvalues: 5246
unique eigenvalues: 2560
gsl: interp.c:83: ERROR: x values must be monotonically increasing

Here's my command-line:

kinc run rmt --input yeast.cmx --log yeast-RMT.log --tstart 0.99 --tstep 0.001 --tstop 0.5 --minpace 10 --maxpace 40 --bins 60

bentsherman commented 6 years ago

Hmm, it looks like @4ctrl-alt-del reverted some of the RMT code when he went through everything. Tell him he needs to test his code more often! Hehe but anyway should be fixed now.

spficklin commented 6 years ago

Thanks @bentsherman! Just to confirm, to get this fix I need to use the develop branch or the mater branch?

bentsherman commented 6 years ago

Use the develop branch, master is only updated for version releases.