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T-aaron1 / Group-project

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List of kinases for which no info was found #14

Open nobeeakon opened 4 years ago

nobeeakon commented 4 years ago

for the following kinases, no information was found in Uniprot api [1]. We don't have information of them, for the moment.

'Q6A1A2', 'Q00532', 'Q8IVT5', 'Q9UF33', 'O15197', 'O14965', 'Q96LW2', 'Q86TW2'

Need to figure out where to get information and retrieve it

[1] https://www.ebi.ac.uk/proteins/api/coordinates?offset=0&size=100&accession=P08069

nobeeakon commented 4 years ago

not found information for the following substrates: ['AP003355.2', 'AL117209.1', 'AR', 'XK', 'GTSE1', 'AC137834.1', 'NEFH', 'TH', 'BX276089.2', 'F5', 'NCF1C', 'ADRA2A', 'THOC4', 'ENSP00000400259', 'SI', 'PLXNA3', 'TG', 'SEPT7', 'AC068353.1', 'H3F3A', 'MIR1236', 'F3', 'HIST4H4', 'HTR2C', 'C3', 'ADRB1', 'AC011498.3', 'AC079061.1', 'GCN1L1', 'PALM2-AKAP2', 'AC012652.1', 'AC116353.1', 'PMS2L1', 'PRH2', 'AC107375.3', 'AC136632.1', 'CYTSA', 'AD000671.1', 'KIAA1267', 'NSUN5C', 'RP4-697K14.2', 'AP000926.2', 'AP003115.1', 'AC005277.1', 'AL161668.2', 'KL', 'AC024270.1', 'GAGE2C', 'AC023024.2', 'AC004899.2', 'AC010619.2', 'AC130686.3', 'CS', 'ENSP00000344083', 'ENSP00000348706', 'ENSP00000358164', 'ENSP00000380177', 'RP5-1187M17.1', 'SNORD84', 'TF', 'CP', 'BIRC8', 'AC138894.3', 'ENSP00000374187', 'BTN2A3', 'ENSP00000413503', 'PMS2L11', 'KIAA0368', 'ANKRD43', 'FREM2', 'MB', 'FH', 'TMED11P', 'J01415.8', 'SLC22A20', 'SCAND2', 'AC011479.2', 'AC004086.1', 'HR', 'AC005393.1', 'RP1-21O18.1', 'AL096711.1', 'SURF2', 'PC', 'AC149644.1', 'RP11-78J21.3', 'RP11-23D24.1', 'PPAPR3', 'NME2P1', 'TMSL3']

nobeeakon commented 4 years ago

from phosphosite plus ['P18433-2', 'P15941', 'P05107', 'Q9Y2R2', 'P11413-3', 'Q14654', 'P07101-4', 'P18887', 'O00170', 'P00736', 'O43852-15', 'Q02078', 'O15392', 'O14965', 'P24928', 'P36956-3', 'Q9P2M7', 'O14929', 'P31995', 'F8W6Q8', 'P62988', 'Q16181', 'Q9Y520', 'O95785', 'Q8IY67-2', 'Q00341', 'Q6T4R5', 'P15822', 'Q9Y4F5', 'Q8WWI1', 'P33076', 'Q13936', 'Q86UR1', 'P19544', 'Q13522', 'Q9NQA5', 'Q8IVT5', 'P08588', 'Q8WX93', 'Q15154', 'P29353-3', 'P98175-2', 'Q15642-3', 'Q92529-2', 'Q5TKA1', 'Q14135-4', 'Q9HCH0', 'P11171-2', 'O94901-9', 'Q9NQR1', 'Q9NZH5', 'P29590-3', 'O60602', 'P12036', 'P06401-2', 'O15033-2', 'P20823', 'Q15300', 'P23443-2', 'O60504_VAR_055019', 'Q5TZA2-2', 'Q96T88-2', 'Q6PKG0', 'Q13507', 'O94953', 'Q13625', 'Q08499-4', 'P35398-4', 'Q9NYZ3', 'Q9H2D6-5', 'P51587', 'AAC50053', 'Q9Y2T1', 'NP_001184222', 'Q14160', 'P05067-4', 'O14559', 'P00749', 'P49802', 'O94759-3', 'O94901', 'P02810', 'Q6DN03', 'Q17R91', 'Q6DRA6', 'P17301', 'P21127-12', 'Q92908-2', 'Q7Z2E3', 'Q86V81', 'P19544-7', 'Q9H4X1-2', 'Q12809_VAR_014388']