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T-aaron1 / Group-project

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code to check if a kinase is in the database #18

Closed nobeeakon closed 4 years ago

nobeeakon commented 4 years ago

we need a function that checks in the database if a particular kinase is in the database eg: kinase = 'P31749'

mahdm001 commented 4 years ago

I have just uploaded the python script in making a basic relational database with two tables: Kinases and Phospohsites. As of right now, there's an example SQL query that returns the name of a kinase and its mass-based in which residue position it gets phosphorylated. Once all kinase-related information is gathered, the function to get a particular kinase can easily be done.

nobeeakon commented 4 years ago

@mahdm001 nice man, which file is it?, or is it in an ipython notebook?

mahdm001 commented 4 years ago

It's an ipython/jupyter notebook