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TACC / rgc

RollingGantryCrane pulls and converts containers to LMOD modules
https://tacc.github.io/rgc/
BSD 3-Clause "New" or "Revised" License
12 stars 3 forks source link

Confirm that pipes work #14

Closed zyndagj closed 3 years ago

maa146 commented 4 years ago

It works.

$type abyss-fac
abyss-fac is a function
abyss-fac ()
{
    singularity exec /scratch/maa146/biocontainers/containers/abyss/abyss-v1.9.0_cv4.simg abyss-fac $@
}

$cat /GCF_000196035.1_ASM19603v1_genomic.fna | abyss-fac
n       n:500   L50     min     N80     N50     N20     E-size  max     sum     name
1       1       1       2944528 2944528 2944528 2944528 2944528 2944528 2944528 -