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TAMU-CPT / galaxy-tools

CPT's Galaxy Tools
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Add InterPro link in popup window #23

Open jrr-cpt opened 6 years ago

jrr-cpt commented 6 years ago

When browsing hits in the InterPro Scan evidence track, can we add a direct link to the Interpro website with that IPR number in the popup window?

jrr-cpt commented 6 years ago

Some images with the IPR number shown from several InterPro Scan track outputs screen shot 2018-08-13 at 9 25 21 am screen shot 2018-08-13 at 9 25 33 am screen shot 2018-08-13 at 9 25 46 am screen shot 2018-08-13 at 9 26 03 am

MoffMade commented 4 years ago

We'll need to see if that information is made available to us in a programmatic way. My gut says it should be doable but I am unsure how apollo handles/displays links in the feature data.

jrr-cpt commented 4 years ago

I can't say if you can access it through the InterProScan output, but I can say that the results for each database scanned through the tool will be linked with a base url, see examples here: http://www.ebi.ac.uk/interpro/entry/InterPro/IPR002196/ http://www.ebi.ac.uk/interpro/entry/panther/PTHR38107/ http://www.ebi.ac.uk/interpro/entry/cathgene3d/G3DSA:1.10.530.40/ http://www.ebi.ac.uk/interpro/entry/ssf/SSF53955/