Week 09/10/2023 - Githubissues

TARGENE / targene-pipeline

Nextflow pipeline for Targeted-Learning of genetic effects

MIT License

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Week 09/10/2023 #100

Closed olivierlabayle closed 1 year ago

olivierlabayle commented 1 year ago

TMLE Package checklist

[ ] Checkup on R issue
[ ] Checkup with Ava and Sjoerd on CV Algo correctness
[ ] IPW
[ ] AIPW
[ ] C-TMLE
[ ] Docs
[ ] rename package
[ ] Update targene paper's method part
[ ] Update Targene paper's software part?

Misc

[x] Increase font size in targene paper plot
[x] Reread paper with story telling in mind
[x] Fix comments including Sjoerd's from Teams
[ ] Fix the thinbyLD process
[x] Rerun deprivation with covariates as confounders
[x] Follow up on VDR run for bio discovery

PopGen:

[ ] Try to make a Linear Estimator
[ ] Try to make a LMM estimator
[ ] Rerun vdr with white ethnicity info to be able to filter (https://biobank.ndph.ox.ac.uk/ukb/coding.cgi?id=1001)
[x] Generate the plots at scale

Recurrent:

[x] Book Club prep
[x] Kaggle
[ ] Non parametric statistics reading