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TARGENE
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targene-pipeline
Nextflow pipeline for Targeted-Learning of genetic effects
MIT License
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Week 25/03/2024
#158
Closed
olivierlabayle
closed
5 months ago
olivierlabayle
commented
5 months ago
Learning:
[x] TMLE lecture / Semi parametrics / Causal Inference reading
[x] Read one paper from Ideas:
https://github.com/TARGENE/targene-pipeline/issues/97
VDR Study:
[ ] Rerun with new targene release and possibly updated Q learning config
[x] Analyse perm tests
Simulation Study:
[x] Fix TMPDIR issue (probably just write to local dior instead)
[x]
Density Estimation Simulation
[x] Checkpoint best neural net
[x] Add retrain on whole data in model selection
[x] Find good heuristic to increase model size
[x] Add some architecture twists: e.g. batchnorm
[ ] Make sieve neural net and GLM estimators
[x] Test quality of sample
[ ]
Analysis
[x] Write Configuration File for permutation null sampler
[x] Write Configuration File for Density estimation model comparison
[x] Write COnfiguration File for Density Estimation Sampler estimation
[ ] Define study scope
Post PhD:
[ ] Rework Resume
[x] Ask for referee
Learning:
VDR Study:
Simulation Study:
Post PhD: