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TARGENE
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targene-pipeline
Nextflow pipeline for Targeted-Learning of genetic effects
MIT License
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Week 27/05/2024
#181
Closed
olivierlabayle
closed
3 months ago
olivierlabayle
commented
3 months ago
Misc:
[x] Write Thesis
[ ]
Cambridge 9th June 2024
Simulation Study:
[x] Investigate missing SNP
[x] Add null CALL_THRESHOLD option in the pipeline and document
[ ]
Analysis
VDR:
[ ] On new branch: Use eQTLGen to identify more eQTLs
[ ] Look at what Breeshey has done and potentially reuse or upgrade.
[ ] Rerun
[x] Clean repo make 3 run configs for sex traits merge on main
[x] Rerun
[ ] Neg control again using the bootstrap null
TMLE.jl:
[x] Make ComposedEstimands function agnostic
[x] update TargetedEstimation.jl dep
[ ] Add a "famous" simulation to docs?
Misc:
Simulation Study:
VDR:
TMLE.jl: