Week 27/05/2024 - Githubissues

TARGENE / targene-pipeline

Nextflow pipeline for Targeted-Learning of genetic effects

MIT License

11 stars 0 forks source link

Week 27/05/2024 #181

Closed olivierlabayle closed 3 months ago

olivierlabayle commented 3 months ago

Misc:

[x] Write Thesis
[ ] Cambridge 9th June 2024

Simulation Study:

[x] Investigate missing SNP
[x] Add null CALL_THRESHOLD option in the pipeline and document
[ ] Analysis

VDR:

[ ] On new branch: Use eQTLGen to identify more eQTLs
[ ] Look at what Breeshey has done and potentially reuse or upgrade.
[ ] Rerun
- [x] Clean repo make 3 run configs for sex traits merge on main
- [x] Rerun
- [ ] Neg control again using the bootstrap null

TMLE.jl:

[x] Make ComposedEstimands function agnostic
[x] update TargetedEstimation.jl dep
[ ] Add a "famous" simulation to docs?