Week 03/05/2024 - Githubissues

TARGENE / targene-pipeline

Nextflow pipeline for Targeted-Learning of genetic effects

MIT License

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Week 03/05/2024 #182

Closed olivierlabayle closed 3 months ago

olivierlabayle commented 3 months ago

Misc:

[x] Write Thesis
[x] Cambridge 9th June 2024
[x] Loco GWAS

Simulation Study:

[x] Add min occurence consttraint
[x] Look into density estimates and why many logistic regression are better than MLP
[x] Check each variant is within bgen file
[ ] Analysis

DB:

[ ] Look at what Breeshey has done and potentially reuse or upgrade.
[ ] Create estimands files
[ ] Run

VDR:

[ ] Rerun
[ ] Neg control again using the bootstrap null

TMLE.jl:

[ ] Add a "famous" simulation to docs?