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TARGENE
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targene-pipeline
Nextflow pipeline for Targeted-Learning of genetic effects
MIT License
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Week 03/05/2024
#182
Closed
olivierlabayle
closed
3 months ago
olivierlabayle
commented
3 months ago
Misc:
[x] Write Thesis
[x]
Cambridge 9th June 2024
[x] Loco GWAS
Simulation Study:
[x] Add min occurence consttraint
[x] Look into density estimates and why many logistic regression are better than MLP
[x] Check each variant is within bgen file
[ ]
Analysis
DB:
[ ] Look at what Breeshey has done and potentially reuse or upgrade.
[ ] Create estimands files
[ ] Run
VDR:
[ ] Rerun
[ ] Neg control again using the bootstrap null
TMLE.jl:
[ ] Add a "famous" simulation to docs?
Misc:
Simulation Study:
DB:
VDR:
TMLE.jl: