Week 01/07/2024

[olivierlabayle]

Thesis Writing:

• [x] Write Abstract and send to Supervisors
• [ ] Submit intention to submit
• [x] Simulation Study Description
• [x] Density Estimators Results Writing
• [x] The inheritance model
• [x] Non identifiability
• [ ] Methods Sieve variance Plateau
• [ ] The not so close closest estimands
• [ ] Why Targene section
• [ ] Targene UI
• [ ] TarGene benchmark
• [x] Start forward validation results from paper's

Simulation Study:

• [ ] Migrate the reusable code to Simulations.jl and further test
• [ ] Migrate the run setup and plots to another repo within EdBiomedical
• [x] Analysis
• [ ] High dimensional variance should include the idnentity matrix
• [ ] Null Simulation Analysis
  • [ ] Run (Resume once realistic is done)
  • [ ] Check if all linked variants are in HLA region
  • [ ] ...
• [ ] Realistic Simulation Analysis
  • [x] https://github.com/TARGENE/targene-pipeline/issues/187
  • [ ] ...

DB:

• [ ] Review PR
• [ ] Run

VDR:

• [ ] Rerun
• [ ] Neg control again using the bootstrap null

TMLE.jl:

• [ ] Add a "famous" simulation to docs?