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TARGENE
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targene-pipeline
Nextflow pipeline for Targeted-Learning of genetic effects
MIT License
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Week 08/07/2024
#190
Closed
olivierlabayle
closed
1 month ago
olivierlabayle
commented
2 months ago
Thesis Writing:
[ ] Submit intention to submit
[x] Methods Sieve variance Plateau
[x] SP practical
[ ] The not so close closest estimands
[x] Why Targene section
[x] Targene UI
[x] TarGene benchmark
[x] Practical Interactions sections
[ ] TarGene discussion
[x] Background: The Experimental Evidence
[x] Background: From Causality to Association Studies
[ ] Background: From Association Studies Back to Causal Mechanisms
Simulation Study:
[ ] Migrate the reusable code to Simulations.jl and further test
[ ] Migrate the run setup and plots to another repo within EdBiomedical
[ ] High dimensional variance should include the idnentity matrix
[ ] Null Simulation Analysis
[ ] Run (Resume once realistic is done)
[ ] Check if all linked variants are in HLA region
[ ] ...
[ ] Realistic Simulation Analysis
[ ] Understand problem with Eddie again...
DB:
[ ] Review
PR
[ ] Run
VDR:
[ ] Rerun
[ ] Neg control again using the bootstrap null
TMLE.jl:
[ ] Add a "famous" simulation to docs?
Thesis Writing:
Simulation Study:
DB:
VDR:
TMLE.jl: