Week 08/07/2024

[olivierlabayle]

Thesis Writing:

• [ ] Submit intention to submit
• [x] Methods Sieve variance Plateau
• [x] SP practical
• [ ] The not so close closest estimands
• [x] Why Targene section
• [x] Targene UI
• [x] TarGene benchmark
• [x] Practical Interactions sections
• [ ] TarGene discussion
• [x] Background: The Experimental Evidence
• [x] Background: From Causality to Association Studies
• [ ] Background: From Association Studies Back to Causal Mechanisms

Simulation Study:

• [ ] Migrate the reusable code to Simulations.jl and further test
• [ ] Migrate the run setup and plots to another repo within EdBiomedical
• [ ] High dimensional variance should include the idnentity matrix
• [ ] Null Simulation Analysis
  • [ ] Run (Resume once realistic is done)
  • [ ] Check if all linked variants are in HLA region
  • [ ] ...
• [ ] Realistic Simulation Analysis
  • [ ] Understand problem with Eddie again...

DB:

• [ ] Review PR
• [ ] Run

VDR:

• [ ] Rerun
• [ ] Neg control again using the bootstrap null

TMLE.jl:

• [ ] Add a "famous" simulation to docs?