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TARGENE / targene-pipeline

Nextflow pipeline for Targeted-Learning of genetic effects
MIT License
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GLM error #43

Open olivierlabayle opened 1 year ago

olivierlabayle commented 1 year ago

For some reason, the GLM package seems to return a NaN value from the first iteration in some occasions. Follow up: https://github.com/JuliaStats/GLM.jl/issues/417. For now, let's just skip those cases but this needs to be investigated further.

olivierlabayle commented 1 year ago

I suspect many of those issues will be fixed by the next GLM version: either without doing anything or by changing the matrix decomposition to QR (either by default or upon failure)