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TBroTeam / TBro

Visualization and management of denovo transcriptomes
https://tbroteam.github.io/TBro/
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Increase Memory size #60

Closed nterhoeven closed 3 years ago

nterhoeven commented 6 years ago

I got the following error

Maybe the easiest (not the prettiest) way to resolve this is to increase the memory limit in a script with

ini_set('memory_limit', '512M')
PHP Fatal error: Allowed memory size of 134217728 bytes exhausted (tried to allocate 72 bytes) in /share/tbro/TranscriptDB/webservices/listing/Features.php on line 48
iimog commented 6 years ago

Hi @nterhoeven thanks for reporting this issue. It is actually related to #59 For large transcriptomes the sanity check if a transcript belongs to the organism/release combo needs to much memory (because it has to check a huge list of valid ids). Unfortunately, I do not have an easy fix in mind. I will make this check optional via configuration options in the next release. However, I am not happy with this solution and open for any better suggestions.