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TCB-yehong / PhosPiR

An automatic pipeline to analyze phosphoproteomics
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Problem with R version 4.3.0 #4

Open Balgovindya opened 1 year ago

Balgovindya commented 1 year ago

Describe the bug I have used PhosPiR in previous version of R (4.2.2) for my phosphopreotemics data, but as I updated to the R (4.3.0) I am unablr to use it. I am sharing the screenshot, please help to resolve the issue.

To Reproduce Steps to reproduce the behavior:

  1. Go to '...'
  2. Click on '....'
  3. Scroll down to '....'
  4. See error

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TCB-yehong commented 1 year ago

Hi,One of the package (probatch) is no longer supported by the bioconductor depository. Please use the previous R version for now. Another option is to manually install probatch package onto R 4.3.0. which you could download the R package from online, then choose "install from local file" for installation options inside R. I will make changes in about one month time, please try these options before that. Thank you for bearing with me!  -------- Original message --------From: Balgovindya @.> Date: 29/05/2023 20:28 (GMT+08:00) To: TCB-yehong/PhosPiR @.> Cc: Subscribed @.***> Subject: [TCB-yehong/PhosPiR] Problem with R version 4.3.0 (Issue #4) Describe the bug I have used PhosPiR in previous version of R (4.2.2) for my phosphopreotemics data, but as I updated to the R (4.3.0) I am unablr to use it. I am sharing the screenshot, please help to resolve the issue. To Reproduce Steps to reproduce the behavior:

Go to '...' Click on '....' Scroll down to '....' See error

Screenshots

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OS: [Windows 11, I have tried on Mac as well but same issue there as well] Browser [ chrome] Version [e.g. 22]

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Balgovindya commented 1 year ago

Thank you for your help, I tried installing from local file and it worked.